Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_017052: Synechocystis sp. PCC 6803 substr. PCC-N, complete genome

NCBI: NC_017052

Host Lineage: Synechocystis; Synechocystis; ; Chroococcales; Cyanobacteria; Bacteria

General Information: Photosynthesis. The original strain of Synechocystis was isolated from California freshwater.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1159374236326427Island text2.0337931.45820.411Neighbours311BLASTN+15937.gbk
29632511953223208Island text1.7305726.332119.9887Neighbours311BLASTN96325.gbk
3240851*26409923249Island text1.5340227.559613.5096Neighbours311BLASTN240851.gbk
435225139181939569Island text2.7040636.350419.8932Neighbours21BLASTN+352251.gbk
51192099121521123113Island text1.6420728.675815.5945Neighbours311BLASTN1192099.gbk
61283720*130836324644Island text1.6287330.332822.5084Neighbours311BLASTN1283720.gbk
71362280138090518626Island text1.5019427.924422.6459Neighbours329BLASTN1362280.gbk
81610500*164378333284Island text2.3379332.478126.9401Neighbours329BLASTN+1610500.gbk
91717836*174139123556Island text2.0302229.730120.3941Neighbours311BLASTN+1717836.gbk
101957598198048722890Island text1.4858625.656621.2937Neighbours311BLASTN+1957598.gbk
112745420276844923030Island text1.5410429.882123.8336Neighbours311BLASTN2745420.gbk
122775263*280085125589Island text1.6218528.219217.5813Neighbours311BLASTN+2775263.gbk
133073713309166217950Island text1.8521928.970119.6341Neighbours311BLASTN+3073713.gbk
143433162345724124080Island text1.4859629.152519.838Neighbours311BLASTN3433162.gbk
153474500349722122722Island text1.6041433.15354.4829Neighbours311BLASTN3474500.gbk