Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_017047: Rahnella aquatilis HX2 chromosome, complete genome

NCBI: NC_017047

Host Lineage: Rahnella aquatilis; Rahnella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Rahnella aquatilis is a facultatively anaerobic, nitrogen-fixing, gram-negative rod from the Enterobacteriaceae family. It is usually found in fresh water. It is sometimes found in human clinical specimens.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1370837*39238021544Island text1.640833.339926.5562Neighbours51BLASTN370837.gbk
21434500*146039225893Island text1.5638137.50354.7113Neighbours41BLASTN+1434500.gbk
31551836157932427489Island text2.7237947.00219.5969Neighbours41BLASTN+1551836.gbk
41796000*181721321214Island text2.2879942.238321.0884Neighbours41BLASTN+1796000.gbk
51862893189544632554Island text1.6023535.371324.7762Neighbours41BLASTN+1862893.gbk
61906000193239026391Island text2.6515646.660524.6529Neighbours41BLASTN+1906000.gbk
71934430195280718378Island text2.0893442.366421.6222Neighbours41BLASTN1934430.gbk
82042346206859926254Island text1.4871533.773127.2567Neighbours41BLASTN+2042346.gbk
92079368*212514345776Island text1.5116131.716122.7768Neighbours41BLASTN+2079368.gbk
102260118229221432097Island text2.5590343.692322.161Neighbours51BLASTN2260118.gbk
112957957298482026864Island text1.4751933.244227.2201Neighbours41BLASTN+2957957.gbk
123085000313761852619Island text2.4081743.900420.0534Neighbours41BLASTN+3085000.gbk
133174588319538220795Island text4.0473754.311525.6775Neighbours41BLASTN+3174588.gbk
143212000*323486722868Island text1.5750132.600532.2651Neighbours41BLASTN+3212000.gbk
153793000381371520716Island text1.436435.59722.1952Neighbours41BLASTN+3793000.gbk
163869350389371924370Island text1.7142833.246423.777Neighbours41BLASTN3869350.gbk
173907854*393661228759Island text1.4015731.930925.5878Neighbours41BLASTN3907854.gbk
183936624397109934476Island text2.1626541.402630.4882Neighbours41BLASTN+3936624.gbk
194037674406136523692Island text4.9821151.637724.039Neighbours51BLASTN+4037674.gbk
204298207*433612437918Island text1.5286732.952326.4649Neighbours41BLASTN+4298207.gbk
214379989*440361423626Island text1.7289635.145521.9093Neighbours41BLASTN+4379989.gbk