Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_017046: Salmonella enterica subsp. enterica serovar Typhimurium str. 798

NCBI: NC_017046

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Salmonella enterica var. Typhimurium strain 798 causes persistent infections in pigs and can spread to other animals and cause food-borne disease in humans. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1257584831822561Island text2.2174931.015916.0799Neighbours41BLASTN25758.gbk
232984735451724671Island text1.816336.331734.9332Neighbours41BLASTN329847.gbk
3366905*38629119387Island text1.5246130.368436.3382Neighbours41BLASTN+366905.gbk
460478962335818570Island text2.0572529.176822.3109Neighbours41BLASTN604789.gbk
577563680394328308Island text3.5012142.655325.3895Neighbours41BLASTN+775636.gbk
681941483876319350Island text1.7610529.541629.5407Neighbours51BLASTN+819414.gbk
791924994183522587Island text2.0169237.112120.3179Neighbours41BLASTN+919249.gbk
81127325*114840521081Island text1.9370131.95730.0254Neighbours51BLASTN1127325.gbk
91164176*118868624511Island text1.8859431.068419.0784Neighbours41BLASTN+1164176.gbk
101277787*130431026524Island text2.4646137.670931.3035Neighbours41BLASTN+1277787.gbk
111358531*138216023630Island text1.9159232.649422.9748Neighbours41BLASTN+1358531.gbk
121428272145391525644Island text2.1778334.426530.9738Neighbours41BLASTN1428272.gbk
131574057159268418628Island text1.8804329.523324.8751Neighbours41BLASTN+1574057.gbk
141669995169652526531Island text2.5081637.711621.0708Neighbours41BLASTN+1669995.gbk
151709578173220522628Island text1.6852232.861122.2439Neighbours41BLASTN1709578.gbk
161902788193078728000Island text2.0261236.898123.0282Neighbours41BLASTN+1902788.gbk
172026672205024523574Island text1.6617533.347518.0473Neighbours41BLASTN+2026672.gbk
182150072218404433973Island text3.9495542.753828.1522Neighbours41BLASTN+2150072.gbk
192324554*236240837855Island text1.8350635.018222.4676Neighbours51BLASTN+2324554.gbk
202717810273786120052Island text1.6238529.605434.9738Neighbours41BLASTN+2717810.gbk
212756000*277876222763Island text1.7870730.924715.7632Neighbours41BLASTN+2756000.gbk
222869873288847218600Island text1.50336.906253.1612Neighbours41BLASTN+2869873.gbk
232896651*293171935069Island text1.5012334.180433.3293Neighbours41BLASTN+2896651.gbk
242943929296289818970Island text1.7654232.806523.2201Neighbours51BLASTN+2943929.gbk
253027161308012452964Island text1.6543531.442529.4737Neighbours41BLASTN+3027161.gbk
263923000*394759924600Island text2.131934.86126.9618Neighbours41BLASTN3923000.gbk
273991551401465123101Island text2.4803439.065722.8611Neighbours51BLASTN+3991551.gbk
284025998404933623339Island text1.4684631.815435.4367Neighbours41BLASTN+4025998.gbk
294490500451910628607Island text1.6239836.153823.4062Neighbours41BLASTN4490500.gbk
304571833*459430922477Island text1.5108639.658354.9032Neighbours41BLASTN+4571833.gbk