Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_017045: Riemerella anatipestifer ATCC 11845 = DSM 15868 chromosome,

NCBI: NC_017045

Host Lineage: Riemerella anatipestifer; Riemerella; Flavobacteriaceae; Flavobacteriales; Bacteroidetes; Bacteria

General Information: This bacterium is the causative agent of a septicemic disease in ducks, geese, turkeys and other birds. Facultative aerobic Gram-negative bacterium isolated from duck blood.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
112917329173Island text1.483322.437425.5269Neighbours21BLASTN1.gbk
29950011753718038Island text1.9096521.230539.2313Neighbours21BLASTN+99500.gbk
311904613884419799Island text2.244721.172840.5693Neighbours21BLASTN+119046.gbk
432803135166023630Island text1.7969721.203237.5649Neighbours323BLASTN+328031.gbk
5631761*65145319693Island text1.4793522.671431.4655Neighbours21BLASTN+631761.gbk
61579596*160214322548Island text2.9847324.309142.334Neighbours21BLASTN+1579596.gbk
71801201*182442923229Island text3.1796324.31543.8338Neighbours21BLASTN+1801201.gbk
81902582*192753624955Island text1.7749919.747138.135BLASTN+1902582.gbk