Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_017043: Rickettsia montanensis str. OSU 85-930 chromosome, complete genome

NCBI: NC_017043

Host Lineage: Rickettsia montanensis; Rickettsia; Rickettsiaceae; Rickettsiales; Proteobacteria; Bacteria

General Information: Animal pathogen in Mammalia (intracellular obligate). Rickettsiae are obligate intracellular Gram-negative bacteria mostly found in arthropods, some of which cause mild to severe diseases in humans. R. montanensis has been isolated from Dermacentor variabilis ticks.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1376441*40415027710Island text2.0916414.92527.8849Neighbours21BLASTN+376441.gbk
2589500*60839618897Island text1.4941716.00823.8153BLASTN589500.gbk
373515075552120372Island text2.6393813.577127.2969Neighbours21BLASTN+735150.gbk
4898734*92059921866Island text1.6367717.589426.0602Neighbours21BLASTN898734.gbk
5990395*103382243428Island text1.5456714.911827.5916Neighbours21BLASTN+990395.gbk
61055569*107908723519Island text1.3350114.062521.0257Neighbours21BLASTN1055569.gbk