Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_017042: Rickettsia rhipicephali str. 3-7-female6-CWPP chromosome, complete

NCBI: NC_017042

Host Lineage: Rickettsia rhipicephali; Rickettsia; Rickettsiaceae; Rickettsiales; Proteobacteria; Bacteria

General Information: Animal pathogen in Mammalia (intracellular obligate). Rickettsiae are obligate intracellular Gram-negative bacteria mostly found in arthropods, some of which cause mild to severe diseases in humans. Rickettsia rhipicephali was first identified in Rhipicephalus sanguineus ticks.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
177363*10024922887Island text2.890312.265928.7185Neighbours21BLASTN+77363.gbk
2251515*27059919085Island text1.4960412.737125.0548Neighbours21BLASTN+251515.gbk
331000033354723548Island text1.6664513.666825.4087Neighbours21BLASTN+310000.gbk
41022112*104509922988Island text2.0611314.645127.9915Neighbours21BLASTN1022112.gbk
51206000*122844622447Island text1.6065711.718817.4808Neighbours21BLASTN+1206000.gbk