Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_017039: Synechocystis sp. PCC 6803 substr. PCC-P, complete genome

NCBI: NC_017039

Host Lineage: Synechocystis; Synechocystis; ; Chroococcales; Cyanobacteria; Bacteria

General Information: Photosynthesis. The original strain of Synechocystis was isolated from California freshwater.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1159374236326427Island text2.0330831.45820.411Neighbours311BLASTN+15937.gbk
29632511953223208Island text1.7300326.332119.9887Neighbours311BLASTN96325.gbk
3240863*26409923237Island text1.531227.36512.5594Neighbours311BLASTN240863.gbk
435226339183139569Island text2.7027136.334619.8903Neighbours21BLASTN+352263.gbk
51192111121522323113Island text1.6461628.233215.6006Neighbours311BLASTN1192111.gbk
61283732*130837524644Island text1.626330.169522.4553Neighbours311BLASTN1283732.gbk
71362292138091718626Island text1.4988427.924422.6459Neighbours329BLASTN1362292.gbk
81610602*164379533194Island text2.3592332.678726.7108Neighbours329BLASTN+1610602.gbk
91717848*174140323556Island text2.0449729.694120.6877Neighbours311BLASTN+1717848.gbk
101957610198049922890Island text1.4868625.425621.0318Neighbours311BLASTN+1957610.gbk
112745432276846123030Island text1.5373729.882123.8336Neighbours311BLASTN2745432.gbk
122775275*280115925885Island text1.6454828.408116.8909Neighbours311BLASTN+2775275.gbk
133073724309167317950Island text1.8373429.033219.2635Neighbours311BLASTN+3073724.gbk
143433173345725224080Island text1.4875429.334920.8064Neighbours311BLASTN3433173.gbk
153474500349723222733Island text1.6029633.399254.7174Neighbours311BLASTN3474500.gbk