Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_017033: Frateuria aurantia DSM 6220 chromosome, complete genome

NCBI: NC_017033

Host Lineage: Frateuria aurantia; Frateuria; Xanthomonadaceae; Xanthomonadales; Proteobacteria; Bacteria

General Information: Country: Japan; Environment: Host; Isolation: Lilium auratum flower, Temp: Mesophile; Temp: 30C. Gram-negative.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1276741*30026923529Island text2.8428427.735536.1722Neighbours11BLASTN+276741.gbk
2678321*70509926779Island text1.8951326.446437.4866Neighbours11BLASTN678321.gbk
31052000*108060728608Island text2.8017626.116835.9315Neighbours11BLASTN+1052000.gbk
41089579111059921021Island text1.7628925.258425.7567Neighbours11BLASTN+1089579.gbk
51525132*154933324202Island text1.9074624.092333.2372Neighbours11BLASTN1525132.gbk
61557981158126123281Island text1.6786320.277833.4937Neighbours11BLASTN+1557981.gbk
71672313169509922787Island text1.5172820.421915.3246Neighbours11BLASTN+1672313.gbk
81939507196286123355Island text1.483619.929519.9172Neighbours11BLASTN+1939507.gbk
92081206*210859927394Island text1.8153623.131126.7322Neighbours11BLASTN+2081206.gbk
102758582*278421825637Island text1.7408218.602218.9961Neighbours11BLASTN+2758582.gbk
113013654304983536182Island text2.4630328.28134.4953Neighbours11BLASTN+3013654.gbk
123189282320709917818Island text1.6537822.432832.4967BLASTN3189282.gbk