Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_017031: Corynebacterium pseudotuberculosis P54B96 chromosome, complete

NCBI: NC_017031

Host Lineage: Corynebacterium pseudotuberculosis; Corynebacterium; Corynebacteriaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This disease is found in all the world's major sheep and goat production areas, causing significant economic losses worldwide, mainly due to the reduction of wool, meat and milk yields, decreased reproductive efficiencies of affected animals and condemnation of carcasses and skins in abattoirs. In some cases, the infection produces few obvious clinical signs in the animal, remaining unrecognized until a post-mortem examination has been carried out and, making it difficult to obtain definitive data about prevalence of the disease.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1863093*88963826546Island text1.64538.914843.6564Neighbours17BLASTN+863093.gbk
21039548*107435634809Island text1.6196936.357846.7316Neighbours17BLASTN+1039548.gbk
31172644119117318530Island text1.493536.995425.2467Neighbours17BLASTN+1172644.gbk
41261289*128609924811Island text1.5956437.620747.2811Neighbours17BLASTN1261289.gbk
51298450*131625717808Island text1.5056637.791850.3533Neighbours17BLASTN1298450.gbk
61328500*134659918100Island text1.5275135.949732.6989BLASTN1328500.gbk
71361687*138006418378Island text1.4894736.96540.9185Neighbours17BLASTN+1361687.gbk
81420738*143959918862Island text1.5298235.147146.9728Neighbours17BLASTN1420738.gbk
92036500*206227625777Island text1.7852139.090952.0658Neighbours17BLASTN+2036500.gbk