Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_017030: Corallococcus coralloides DSM 2259 chromosome, complete genome

NCBI: NC_017030

Host Lineage: Corallococcus coralloides; Corallococcus; Myxococcaceae; Myxococcales; Proteobacteria; Bacteria

General Information: Aerobic, halophillic, Gram-negative bacterium.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1158947*18045821512Island text3.8971821.790232.4619Neighbours11BLASTN158947.gbk
257287159213819268Island text1.5252515.413721.5759Neighbours11BLASTN+572871.gbk
32263268228846525198Island text1.610814.93815.3125Neighbours11BLASTN+2263268.gbk
42299592*233458134990Island text1.6867817.91111.9233Neighbours11BLASTN+2299592.gbk
52728175275016621992Island text2.8840922.864128.0763Neighbours11BLASTN+2728175.gbk
63017802*304037022569Island text1.4614816.105310.2814Neighbours11BLASTN3017802.gbk
73091313*314133350021Island text1.5571117.366218.8172Neighbours11BLASTN3091313.gbk
83381500340016918670Island text1.6879118.522616.2708Neighbours11BLASTN+3381500.gbk
93546837356776220926Island text4.1937621.420234.0184Neighbours11BLASTN+3546837.gbk
103608000363101123012Island text1.4969215.792213.6101Neighbours11BLASTN+3608000.gbk
113668146369017022025Island text1.6782516.499723.4272Neighbours11BLASTN3668146.gbk
123771675379311921445Island text1.9754914.880211.5239Neighbours11BLASTN3771675.gbk
133981310400572524416Island text1.6120317.85918.4438Neighbours11BLASTN+3981310.gbk
144062699*408877326075Island text1.5859917.863411.5067Neighbours11BLASTN+4062699.gbk
154146937417375926823Island text2.38617.058520.6389Neighbours11BLASTN4146937.gbk
164237034426078123748Island text3.1058921.584621.7677Neighbours11BLASTN+4237034.gbk
174588167461548027314Island text3.6421325.834717.7713Neighbours11BLASTN4588167.gbk
185558429*562055262124Island text1.5275516.332312.7197Neighbours11BLASTN+5558429.gbk
195785681580933723657Island text1.5539717.141122.7372Neighbours11BLASTN5785681.gbk
205874824590781132988Island text2.5401819.322816.4722Neighbours11BLASTN+5874824.gbk
216061070*609117030101Island text1.7702615.172117.7123Neighbours11BLASTN+6061070.gbk
226252756*627697224217Island text4.1182427.141335.9514Neighbours11BLASTN6252756.gbk
236297351631807520725Island text3.4764325.131722.3681Neighbours11BLASTN6297351.gbk
246558624658537526752Island text1.4087520.093625.941Neighbours11BLASTN+6558624.gbk
256878319690343425116Island text1.7500315.90120.6983Neighbours11BLASTN6878319.gbk
266912830*693778724958Island text2.9489921.537228.5305Neighbours11BLASTN6912830.gbk
277514500753809523596Island text2.361721.546327.442Neighbours11BLASTN+7514500.gbk
287557295758118923895Island text1.9792717.463113.5391Neighbours11BLASTN+7557295.gbk
297967192799268125490Island text2.0849617.603323.0174Neighbours8BLASTN+7967192.gbk
308551795857594624152Island text1.552115.947219.3446Neighbours11BLASTN+8551795.gbk
318599515*862912129607Island text1.4969818.932432.4461Neighbours11BLASTN+8599515.gbk
328667935*869631428380Island text1.4953516.549122.92Neighbours11BLASTN+8667935.gbk
338766757879418227426Island text1.7257416.462916.0503Neighbours11BLASTN8766757.gbk
349028412*905081422403Island text2.057520.82716.5428Neighbours11BLASTN9028412.gbk
359465809950063034822Island text2.6521721.312231.2359Neighbours11BLASTN+9465809.gbk
369818064*984526427201Island text1.72418.038113.4639Neighbours11BLASTN+9818064.gbk