Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_017028: Candidatus Rickettsia amblyommii str. GAT-30V chromosome, complete

NCBI: NC_017028

Host Lineage: Rickettsia amblyommii; Rickettsia; Rickettsiaceae; Rickettsiales; Proteobacteria; Bacteria

General Information: Animal pathogen in Mammalia (intracellular obligate). Rickettsiae are obligate intracellular Gram-negative bacteria mostly found in arthropods, some of which cause mild to severe diseases in humans. Rickettsia amblyommii, a member of the spotted fever antigenic and genetic group Rickerriae infects Amblyomma ticks in the United States, Panama, French Guiana, Brazil, and Argentina.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1109811*13299423184Island text3.0987212.062330.0889Neighbours21BLASTN+109811.gbk
2180219*20486624648Island text1.4698718.458228.7428Neighbours21BLASTN+180219.gbk
3261589*28115619568Island text1.5470119.333730.0737Neighbours21BLASTN261589.gbk
431600033359917600Island text1.5823212.606419.9293Neighbours21BLASTN+316000.gbk
51030000105044720448Island text2.4900112.712828.7185Neighbours21BLASTN+1030000.gbk
61131896*115126019365Island text2.2507112.998526.5136Neighbours21BLASTN+1131896.gbk
71348865*137259923735Island text1.5576615.646725.8479BLASTN1348865.gbk