Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_017025: Flavobacterium indicum GPTSA100-9, complete genome

NCBI: NC_017025

Host Lineage: Flavobacterium indicum; Flavobacterium; Flavobacteriaceae; Flavobacteriales; Bacteroidetes; Bacteria

General Information: Isolated from warm spring water in Assam, India. Cells are Gram-negative, strictly aerobic, non-motile and occur mostly as single slender rods, but sometimes in pairs; tend to form filaments in old cultures.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
128318230609922918Island text3.025123.126528.7697Neighbours21BLASTN+283182.gbk
231183233673024899Island text1.5562922.932930.9477Neighbours21BLASTN+311832.gbk
3653217*67876025544Island text1.5887715.615924.7472Neighbours21BLASTN653217.gbk
41278374131118032807Island text1.8734919.491128.7771Neighbours325BLASTN1278374.gbk
51651870167677224903Island text3.9589424.529737.3854Neighbours21BLASTN+1651870.gbk
61735835175493519101Island text2.8449622.549931.77Neighbours21BLASTN+1735835.gbk
71761918178571623799Island text2.717222.796330.5401Neighbours211761918.gbk