Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_016948: Mycobacterium intracellulare MOTT-64 chromosome, complete genome

NCBI: NC_016948

Host Lineage: Mycobacterium intracellulare; Mycobacterium; Mycobacteriaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Like other closely related Actinomycetales, such as Nocardia and Corynebacterium, Mycobacteria have unusually high genomic DNA GC content and are capable of producing mycolic acids as major components of their cell wall. Mycobacterium intracellulare is a member of the Mycobacterium avium complex (MAC). These organisms cause tuberculosis in birds, and pulmonary and disseminated infections in immunocompromized humans. Mycobacterium intracellulare is also an important contributor to MAC-associated pulmonary infections in immunocompetent patients. Infection results in a characteristic pulmonary disease which requires expensive drug therapy for successful treatment. Mycobacterium intracellulare can also be isolated from the environment and, like other environmental organisms, is able to form and survive in biofilms.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1419500*44511125612Island text2.0539316.231615.6008Neighbours11BLASTN+419500.gbk
2678939*71567436736Island text2.1229720.02625.3283Neighbours11BLASTN+678939.gbk
31074034*109628822255Island text1.7671517.520116.4758Neighbours11BLASTN+1074034.gbk
41696000171359917600Island text2.968921.60127.9605Neighbours11BLASTN+1696000.gbk
51761020179266931650Island text1.513713.56414.8252Neighbours11BLASTN+1761020.gbk
61796989182596128973Island text1.7116319.083619.7471Neighbours11BLASTN1796989.gbk
72033311206116927859Island text1.7191316.572912.1593Neighbours11BLASTN+2033311.gbk
82129335215781728483Island text2.4265519.61314.5386Neighbours11BLASTN2129335.gbk
92931285298115049866Island text2.2520619.183824.226Neighbours11BLASTN+2931285.gbk
103023940304644222503Island text1.8305817.070418.0719Neighbours11BLASTN3023940.gbk
113104403312909924697Island text1.5280914.517618.444Neighbours11BLASTN3104403.gbk
123381848343001148164Island text1.5848112.753318.119Neighbours11BLASTN3381848.gbk
133724390*374532720938Island text2.1148819.492218.414Neighbours11BLASTN+3724390.gbk