Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_016947: Mycobacterium intracellulare MOTT-02 chromosome, complete genome

NCBI: NC_016947

Host Lineage: Mycobacterium intracellulare; Mycobacterium; Mycobacteriaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Like other closely related Actinomycetales, such as Nocardia and Corynebacterium, Mycobacteria have unusually high genomic DNA GC content and are capable of producing mycolic acids as major components of their cell wall. Mycobacterium intracellulare is a member of the Mycobacterium avium complex (MAC). These organisms cause tuberculosis in birds, and pulmonary and disseminated infections in immunocompromized humans. Mycobacterium intracellulare is also an important contributor to MAC-associated pulmonary infections in immunocompetent patients. Infection results in a characteristic pulmonary disease which requires expensive drug therapy for successful treatment. Mycobacterium intracellulare can also be isolated from the environment and, like other environmental organisms, is able to form and survive in biofilms.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
170210*9409923890Island text1.4692813.576112.0478Neighbours11BLASTN+70210.gbk
2666627*69216525539Island text1.7148616.596519.8899Neighbours11BLASTN+666627.gbk
31311264*133586024597Island text1.7327615.287514.7656Neighbours11BLASTN+1311264.gbk
41455744147857022827Island text1.6314314.151312.4139Neighbours11BLASTN+1455744.gbk
51480282150659926318Island text1.5219716.251213.0375Neighbours11BLASTN+1480282.gbk
62210339224399633658Island text2.855121.531528.7478Neighbours11BLASTN2210339.gbk
72380500244359963100Island text2.3521622.983320.8227Neighbours11BLASTN+2380500.gbk
83309898335709947202Island text1.9790119.716518.6075Neighbours11BLASTN3309898.gbk
94186150421158625437Island text2.1438220.287418.6497Neighbours11BLASTN+4186150.gbk
104500329*452960629278Island text1.5599814.462711.0498Neighbours11BLASTN+4500329.gbk