Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_016943: Blastococcus saxobsidens DD2, complete genome

NCBI: NC_016943

Host Lineage: Blastococcus saxobsidens; Blastococcus; Geodermatophilaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Isolated from a sample harvested below the surface of a calcarenite stone from a crumbling wall in Cagliari, Sardinia. Aerobic, chemoorganotrophic, Gram-positive bacterium with a strongly pigmented rudimentary mycelium. It has been isolated from calcarenite walls in Sardinia.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1213644888327520Island text1.7941312.446610.6814Neighbours11BLASTN+21364.gbk
233655036435427805Island text3.3353817.149421.0505Neighbours11BLASTN+336550.gbk
31037000*105743120432Island text1.5803410.25218.12523Neighbours11BLASTN+1037000.gbk
41314500134999535496Island text1.7883311.28327.92931Neighbours11BLASTN+1314500.gbk
51356419137425117833Island text1.6269611.505511.1777Neighbours11BLASTN+1356419.gbk
61422926144838325458Island text1.5898210.347810.2875Neighbours11BLASTN+1422926.gbk
71442885146687023986Island text1.626299.8036210.6773Neighbours11BLASTN+1442885.gbk
81560000*158217722178Island text1.55959.9890613.6862Neighbours11BLASTN+1560000.gbk
91735057176119226136Island text1.5904310.730811.1524Neighbours11BLASTN1735057.gbk
101810417182933218916Island text2.3580615.317410.5189Neighbours11BLASTN+1810417.gbk
111956719197468517967Island text1.5067711.211116.0007Neighbours11BLASTN+1956719.gbk
122054688207644821761Island text1.6273110.24749.41649Neighbours11BLASTN+2054688.gbk
132391366*241018218817Island text1.6026213.11315.8525Neighbours11BLASTN+2391366.gbk
143037382306224924868Island text2.9218318.854125.0761Neighbours8BLASTN+3037382.gbk
153270308332089550588Island text1.5938710.39647.91814Neighbours11BLASTN+3270308.gbk
163352413338088328471Island text1.674949.9434611.8955Neighbours11BLASTN+3352413.gbk
174145981*417620330223Island text1.9634413.583112.6665Neighbours8BLASTN+4145981.gbk
184194002426071766716Island text1.9127413.545513.5612Neighbours11BLASTN+4194002.gbk
194692561471513222572Island text3.6167417.987220.6994Neighbours11BLASTN+4692561.gbk
204799915482279522881Island text1.556116.7124.9473Neighbours11BLASTN4799915.gbk