Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_016941: Staphylococcus aureus subsp. aureus MSHR1132, complete genome

NCBI: NC_016941

Host Lineage: Staphylococcus aureus; Staphylococcus; Staphylococcaceae; Bacillales; Firmicutes; Bacteria

General Information: Staphylcocci are generally found inhabiting the skin and mucous membranes of mammals and birds. Some members of this genus can be found as human commensals and these are generally believed to have the greatest pathogenic potential in opportunistic infections. This organism is a major cause of nosocomial (hospital-acquired) and community-acquired infections. S. aureus continues to be a major cause of mortality and is responsible for a variety of infections including, boils, furuncles, styes, impetigo and other superficial skin infections in humans. Also known to cause more serious infections particularly in the chronically ill or immunocompromised. The ability to cause invasive disease is associated with persistance in the nasal cavity of a host.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
114658*3567021013Island text1.590719.41829.225Neighbours21BLASTN14658.gbk
243300045342320424Island text3.4156318.631425.805Neighbours21BLASTN433000.gbk
3549373*56723717865Island text1.7278819.35532.2421Neighbours21BLASTN549373.gbk
457489959905824160Island text2.8498918.272733.2866Neighbours21BLASTN574899.gbk
5807155*84837241218Island text1.695319.041831.0208Neighbours21BLASTN807155.gbk
61411500143809926600Island text1.461821.090739.9196Neighbours325BLASTN1411500.gbk
71774000*179521121212Island text1.4676221.969235.5007Neighbours21BLASTN1774000.gbk
81979411199824418834Island text1.770323.752437.1947Neighbours21BLASTN+1979411.gbk
92234937*226544830512Island text1.7538220.663836.1356Neighbours325BLASTN+2234937.gbk
102395502241735021849Island text4.0097130.214540.0008Neighbours21BLASTN+2395502.gbk
112498299252440726109Island text1.9071618.721633.4846Neighbours21BLASTN2498299.gbk