Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_016940: Saprospira grandis str. Lewin chromosome, complete genome

NCBI: NC_016940

Host Lineage: Saprospira grandis; Saprospira; Saprospiraceae; Sphingobacteriales; Bacteroidetes; Bacteria

General Information: Gliding bacterium. Saprospira grandis is a gram-negative, marine, multicellular, filamentous flexibacterium. They prey on other bacteria by trapping and devouring them. It is significant because it is known for devouring bacteria and also has been shown to digest algae by the same process. This makes this bacterium important because it is useful in preventing harmful algal blooms. They are mesophilic with their optimum temperature being between 25-30 degrees C, and require a neutral pH. This filamentous organism is matile by gliding. This organism is able to lyse bacterial cells on the surfaces it is moving over.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1190986*22197630991Island text2.090531.57725.1717Neighbours25+190986.gbk
2271500*29371822219Island text2.0839730.936918.0953Neighbours25BLASTN271500.gbk
342181944568123863Island text1.9560327.632532.2268Neighbours25+421819.gbk
447016350295332791Island text1.7714538.290450.807470163.gbk
564537067735831989Island text1.6973130.444443.3859+645370.gbk
6822892*84320520314Island text1.7506629.310620.3009Neighbours25BLASTN+822892.gbk
7995500102359928100Island text2.6904435.103226.0831Neighbours25+995500.gbk
81698000*172009922100Island text1.8589833.084553.5389BLASTN+1698000.gbk
92843500*286589622397Island text1.7609733.435251.849BLASTN2843500.gbk
102974396299711722722Island text1.9334731.673828.8403Neighbours252974396.gbk
113600749362942628678Island text1.6964328.27433.8409+3600749.gbk
123632974365523522262Island text2.0327631.031120.667Neighbours25+3632974.gbk
133696570372003723468Island text2.0693532.260924.0626+3696570.gbk
144026774405670229929Island text2.1083631.065332.7766BLASTN+4026774.gbk
154326000*434799922000Island text1.6177829.186921.9424Neighbours254326000.gbk