Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_016938: Melissococcus plutonius DAT561 chromosome 1, complete genome

NCBI: NC_016938

Host Lineage: Melissococcus plutonius; Melissococcus; Enterococcaceae; Lactobacillales; Firmicutes; Bacteria

General Information: Causative agent of European foulbrood. Insect pathogen. Anaerobic or microaerophilic Gram-positive bacterium. European foulbrood is a disease of honeybee larvae, caused by the bacterium Melissococcus plutonius. It is found on all continents where bees are raised and an economically important disease in many honey-producing countries. Infected larvae usually die rapidly when they are 3-5 days old and in severe cases entire colonies can be lost.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1136331*15712820798Island text1.7642917.586528.5584Neighbours21BLASTN+136331.gbk
219300022067827679Island text2.8636824.058439.4436Neighbours21BLASTN193000.gbk
3336000*35896422965Island text3.3406921.495137.9293Neighbours21BLASTN336000.gbk
41492486*151126018775Island text1.5714716.30927.1105Neighbours21BLASTN1492486.gbk
51830500*185499924500Island text5.0762727.772846.6158Neighbours21BLASTN+1830500.gbk