Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_016937: Francisella tularensis subsp. tularensis TI0902 chromosome,

NCBI: NC_016937

Host Lineage: Francisella tularensis; Francisella; Francisellaceae; Thiotrichales; Proteobacteria; Bacteria

General Information: This organism was first identified by Edward Francis as the causative agent of a plague-like illness that affected squirrels in Tulare county in California in the early part of the 20th century. The organism now bears his name. The disease, which has been noted throughout recorded history, can be transmitted to humans by infected ticks or deerflies, infected meat, or by aerosol, and thus is a potential bioterrorism agent. This organism has a high infectivity rate, and can invade phagocytic and nonphagocytic cells, multiplying rapidly. Once within a macrophage, the organism can escape the phagosome and live in the cytosol. It is an aquatic organism, and can be found living inside protozoans, similar to what is observed with Legionella.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
124654*6389639243Island text1.9336717.610630.9006Neighbours314BLASTN+24654.gbk
2668548565318800Island text1.6048114.892420.0816Neighbours21BLASTN66854.gbk
3141984*17505533072Island text1.6824418.730532.7437Neighbours21BLASTN141984.gbk
4324883*35809933217Island text1.7931421.766338.2191Neighbours21BLASTN324883.gbk
5529459*55448325025Island text1.6633515.422230.0817Neighbours21BLASTN529459.gbk
665029067025319964Island text1.6048915.762426.6049Neighbours21BLASTN+650290.gbk
7707279*73124123963Island text1.4956115.965526.6293Neighbours21BLASTN+707279.gbk
81405000*142338818389Island text3.6915222.424439.0364Neighbours21BLASTN1405000.gbk
91525914*155209926186Island text3.0600319.824633.6285Neighbours21BLASTN1525914.gbk
101577334160313625803Island text1.5106415.357526.407Neighbours21BLASTN1577334.gbk
111625752164802122270Island text1.7285917.117627.1577Neighbours21BLASTN1625752.gbk
121794651181761122961Island text1.4908416.792327.7196Neighbours21BLASTN+1794651.gbk
131850382186959919218Island text1.677316.280927.288Neighbours21BLASTN1850382.gbk