Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_016935: Paenibacillus mucilaginosus 3016 chromosome, complete genome

NCBI: NC_016935

Host Lineage: Paenibacillus mucilaginosus; Paenibacillus; Paenibacillaceae; Bacillales; Firmicutes; Bacteria

General Information: Paenibacillus mucilaginosus (formerly Bacillus mucilaginosus), the type species of Paenibacillus, is consequently widely used as microbial fertilizer in agricultural applications due to its growth-promoting properties. P. mucilaginosus 3016 was isolated from rhizosphere soil and widely used in microbial fertilizer for most manufacturers in China.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
17518610373128546Island text2.7931935.803753.353Neighbours315BLASTN75186.gbk
251705454128124228Island text2.2044541.424238.8331Neighbours315BLASTN517054.gbk
3634500*67831743818Island text2.4321534.966850.1291Neighbours31BLASTN+634500.gbk
478984981825128403Island text2.1481332.630147.4418Neighbours315BLASTN+789849.gbk
597605999622520167Island text1.5728530.64245.6755Neighbours315BLASTN976059.gbk
61306472133115424683Island text2.9548833.420552.7226Neighbours315BLASTN+1306472.gbk
71365463*144181476352Island text7.0819758.121727.7485Neighbours31BLASTN+1365463.gbk
81636278*1737099100822Island text2.4658532.271448.7331Neighbours336BLASTN+1636278.gbk
91752001178009928099Island text3.7233346.464926.2259BLASTN1752001.gbk
101868839191316244324Island text2.0360632.952328.0211Neighbours315BLASTN+1868839.gbk
112069562209482625265Island text2.3575632.420450.1645Neighbours315BLASTN2069562.gbk
122256000229451638517Island text2.4703137.609427.3602Neighbours315BLASTN+2256000.gbk
132302055233153429480Island text3.0774844.366429.8584Neighbours315BLASTN2302055.gbk
1423476912450557102867Island text2.4046135.405847.9516Neighbours315BLASTN+2347691.gbk
152460795249814537351Island text3.1894143.359733.0415Neighbours315BLASTN+2460795.gbk
162503071*254724144171Island text4.2877551.305123.0762Neighbours315BLASTN+2503071.gbk
172567039*263359966561Island text3.4282745.495927.9164Neighbours315BLASTN+2567039.gbk
182918689294276124073Island text3.6234344.864234.46Neighbours315BLASTN+2918689.gbk
193103430312426820839Island text2.2738236.407224.7016Neighbours315BLASTN+3103430.gbk
203229500324815218653Island text2.1217836.733930.5092Neighbours315BLASTN3229500.gbk
213819500385973440235Island text2.52638.849434.0942Neighbours315BLASTN+3819500.gbk
223994500401962125122Island text1.7924334.920428.018Neighbours315BLASTN3994500.gbk
234038265*406559927335Island text1.9839536.036642.5187Neighbours315BLASTN+4038265.gbk
244117485*421495397469Island text2.1692938.105430.4965Neighbours31BLASTN+4117485.gbk
254233223431129278070Island text1.9529633.707732.3808Neighbours315BLASTN+4233223.gbk
264326644435059923956Island text1.9239634.183123.4884Neighbours315BLASTN+4326644.gbk
274367000441709950100Island text1.9545934.334523.5291Neighbours315BLASTN+4367000.gbk
284435759446029324535Island text1.937835.68130.8381Neighbours3154435759.gbk
294813916483209918184Island text2.3718936.824125.4887Neighbours315BLASTN+4813916.gbk
305017317503800320687Island text2.3042337.892327.6514Neighbours315BLASTN+5017317.gbk
316435549646329227744Island text2.4605840.874831.3963Neighbours315BLASTN+6435549.gbk
326464201649242428224Island text2.5457639.541431.8372BLASTN+6464201.gbk
337426389744868722299Island text1.9372133.598423.3331Neighbours315BLASTN+7426389.gbk
347512884753346020577Island text2.2873739.339831.8074Neighbours315BLASTN+7512884.gbk
357872425791564543221Island text1.4641832.842935.4184BLASTN+7872425.gbk
368716704*874399927296Island text1.6873631.812432.5314Neighbours315BLASTN8716704.gbk