Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_016932: Corynebacterium pseudotuberculosis 316 chromosome, complete genome

NCBI: NC_016932

Host Lineage: Corynebacterium pseudotuberculosis; Corynebacterium; Corynebacteriaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This disease is found in all the world's major sheep and goat production areas, causing significant economic losses worldwide, mainly due to the reduction of wool, meat and milk yields, decreased reproductive efficiencies of affected animals and condemnation of carcasses and skins in abattoirs. In some cases, the infection produces few obvious clinical signs in the animal, remaining unrecognized until a post-mortem examination has been carried out and, making it difficult to obtain definitive data about prevalence of the disease.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1175872*19584719976Island text1.5312935.882840.8454BLASTN+175872.gbk
2832748*87609943352Island text1.5180437.846747.8326Neighbours17BLASTN+832748.gbk
31041306*106785126546Island text1.6575237.804146.3731Neighbours17BLASTN+1041306.gbk
41157587117609918513Island text1.5233535.147123.2732Neighbours17BLASTN+1157587.gbk
51246235*127109924865Island text1.6098336.267745.574Neighbours17BLASTN1246235.gbk
61284000*130509921100Island text1.5940438.66550.8025Neighbours17BLASTN1284000.gbk
71309644*133324923606Island text1.5409337.036237.0547Neighbours17BLASTN1309644.gbk
81414226*143415719932Island text1.5621135.252946.9713Neighbours17BLASTN1414226.gbk
91791868*181055718690Island text1.543533.925154.7143Neighbours17BLASTN1791868.gbk
102007001*205136344363Island text1.9674944.097239.9904Neighbours17BLASTN+2007001.gbk