Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_016928: Staphylococcus aureus subsp. aureus M013 chromosome, complete

NCBI: NC_016928

Host Lineage: Staphylococcus aureus; Staphylococcus; Staphylococcaceae; Bacillales; Firmicutes; Bacteria

General Information: Staphylcocci are generally found inhabiting the skin and mucous membranes of mammals and birds. Some members of this genus can be found as human commensals and these are generally believed to have the greatest pathogenic potential in opportunistic infections. This organism is a major cause of nosocomial (hospital-acquired) and community-acquired infections. S. aureus continues to be a major cause of mortality and is responsible for a variety of infections including, boils, furuncles, styes, impetigo and other superficial skin infections in humans. Also known to cause more serious infections particularly in the chronically ill or immunocompromised. The ability to cause invasive disease is associated with persistance in the nasal cavity of a host.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
116869*3652119653Island text1.5616419.648930.1924Neighbours325BLASTN16869.gbk
230662933092724299Island text1.8731117.865435.1322Neighbours21BLASTN+306629.gbk
3561138*58195720820Island text1.8069619.897431.1267Neighbours325BLASTN561138.gbk
4589223*60941020188Island text4.0431825.728540.1834Neighbours325BLASTN589223.gbk
583850085842319924Island text1.5677319.654829.2689Neighbours21BLASTN+838500.gbk
61440319148261642298Island text1.7009521.140938.604Neighbours325BLASTN+1440319.gbk
71538901156809929199Island text1.5711520.468139.3483Neighbours21BLASTN+1538901.gbk
81843597*186792724331Island text1.7004728.605844.0613Neighbours21BLASTN1843597.gbk
92121919*214409922181Island text1.7845718.941528.5236Neighbours21BLASTN2121919.gbk
102249907*228061430708Island text1.8315520.860736.9373Neighbours325BLASTN+2249907.gbk
112411486243420222717Island text4.585931.191343.3126Neighbours21BLASTN+2411486.gbk
122517691*254314625456Island text4.0849624.287535.2576Neighbours21BLASTN2517691.gbk