Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_016912: Staphylococcus aureus subsp. aureus VC40 chromosome, complete

NCBI: NC_016912

Host Lineage: Staphylococcus aureus; Staphylococcus; Staphylococcaceae; Bacillales; Firmicutes; Bacteria

General Information: Staphylcocci are generally found inhabiting the skin and mucous membranes of mammals and birds. Some members of this genus can be found as human commensals and these are generally believed to have the greatest pathogenic potential in opportunistic infections. This organism is a major cause of nosocomial (hospital-acquired) and community-acquired infections. S. aureus continues to be a major cause of mortality and is responsible for a variety of infections including, boils, furuncles, styes, impetigo and other superficial skin infections in humans. Also known to cause more serious infections particularly in the chronically ill or immunocompromised. The ability to cause invasive disease is associated with persistance in the nasal cavity of a host.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
115414*3645721044Island text1.6162420.368330.7912Neighbours21BLASTN15414.gbk
2511182*53451023329Island text1.7883419.700131.6177Neighbours21BLASTN511182.gbk
3541500*55951518016Island text4.0382525.258138.5445Neighbours21BLASTN541500.gbk
41374351141409939749Island text1.5360320.65930.6492Neighbours325BLASTN+1374351.gbk
51732354*175611823765Island text1.5559718.406534.5048Neighbours21BLASTN+1732354.gbk
62035589*205917923591Island text1.7082328.666642.7585Neighbours21BLASTN2035589.gbk
72170615*218909118477Island text1.9334621.200136.474Neighbours325BLASTN+2170615.gbk
82329113234809918987Island text4.1944530.219839.8827Neighbours21BLASTN+2329113.gbk
92433500245914625647Island text3.7694224.042132.5168Neighbours21BLASTN+2433500.gbk