Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_016906: Gordonia polyisoprenivorans VH2 chromosome, complete genome

NCBI: NC_016906

Host Lineage: Gordonia polyisoprenivorans; Gordonia; Gordoniaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Gordonia polyisoprenivorans strain VH2 was isolated from soil of a rubber tree plantation in Vietnam due to its effective degradation of poly(cis-1,4-isoprene) rubber.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
118125423454853295Island text2.6639225.849732.3519Neighbours11BLASTN+181254.gbk
240872044073432015Island text2.5679525.340122.422Neighbours11BLASTN+408720.gbk
383940686248323078Island text2.0043119.327621.4111Neighbours11BLASTN+839406.gbk
41268606*130936640761Island text1.7718720.228119.0177Neighbours11BLASTN+1268606.gbk
51458158*147828120124Island text3.720528.41334.0026Neighbours11BLASTN+1458158.gbk
61565868159164425777Island text1.5054816.84114.2527Neighbours11BLASTN+1565868.gbk
72845424286428518862Island text1.8749218.658821.619Neighbours11BLASTN+2845424.gbk
82871272290278431513Island text2.6612127.171236.0667Neighbours11BLASTN+2871272.gbk
93006748*302859921852Island text1.5240114.685715.3125Neighbours11BLASTN+3006748.gbk
103286384*331355727174Island text1.5357917.092721.6534Neighbours11BLASTN+3286384.gbk
113666358369084524488Island text2.5757525.136635.5045Neighbours11BLASTN+3666358.gbk
123980122400287322752Island text1.5973417.713719.036Neighbours11BLASTN3980122.gbk
134123000*414566122662Island text2.4847519.390621.9542Neighbours11BLASTN+4123000.gbk
144562874*458557522702Island text1.9077720.734240.1533Neighbours11BLASTN+4562874.gbk