Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_016902: Escherichia coli KO11FL chromosome, complete genome

NCBI: NC_016902

Host Lineage: Escherichia coli; Escherichia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Environment: Human intestinal microflora, Host; Temp: Mesophile; Temp: 37C. This organism was named for its discoverer, Theodore Escherich, and is one of the premier model organisms used in the study of bacterial genetics, physiology, and biochemistry. This enteric organism is typically present in the lower intestine of humans, where it is the dominant facultative anaerobe present, but it is only one minor constituent of the complete intestinal microflora. E. coli, is capable of causing various diseases in its host, especially when they acquire virulence traits. E. coli can cause urinary tract infections, neonatal meningitis, and many different intestinal diseases, usually by attaching to the host cell and introducing toxins that disrupt normal cellular processes.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
144744*7499130248Island text2.7873137.435819.2189Neighbours41BLASTN+44744.gbk
288500*11436625867Island text2.5238536.060616.702Neighbours41BLASTN88500.gbk
3119935*14694827014Island text1.7291435.511924.8447Neighbours41BLASTN+119935.gbk
424676726745320687Island text2.5407234.183120.039Neighbours41BLASTN+246767.gbk
561346263169018229Island text1.650829.807133.6064Neighbours41BLASTN+613462.gbk
669370371389120189Island text1.856928.468527.4577Neighbours41BLASTN693703.gbk
790324194330840068Island text5.3780443.83217.5818Neighbours41BLASTN+903241.gbk
81165726*119130025575Island text2.2817336.711322.8306Neighbours41BLASTN+1165726.gbk
91419413144219622784Island text1.4276236.691453.7337Neighbours41BLASTN+1419413.gbk
101475521149709321573Island text1.6016827.875531.5081Neighbours41BLASTN+1475521.gbk
111846492187615129660Island text1.7133330.98624.1341Neighbours41BLASTN1846492.gbk
121902431*192618823758Island text4.1647143.267621.3831Neighbours41BLASTN+1902431.gbk
132305659*232825322595Island text1.692628.687421.1475Neighbours41BLASTN+2305659.gbk
142361628238443522808Island text1.5089633.093137.435Neighbours41BLASTN+2361628.gbk
152395578241927123694Island text1.8058431.631724.132Neighbours41BLASTN+2395578.gbk
162580774260629825525Island text1.8100332.445724.936Neighbours41BLASTN+2580774.gbk
172786000*281204426045Island text1.7093931.309634.7342Neighbours41BLASTN+2786000.gbk
183863932*388609922168Island text2.3612833.705916.4259Neighbours41BLASTN3863932.gbk
193949061*396781618756Island text1.5014730.289420.7151Neighbours41BLASTN+3949061.gbk
204081484*410409522612Island text1.7241229.359224.3635Neighbours41BLASTN4081484.gbk
214199133422817229040Island text2.3529234.513527.8245Neighbours41BLASTN+4199133.gbk
224236680425575819079Island text2.0304831.860422.4792Neighbours41BLASTN+4236680.gbk
234431235445210920875Island text1.5239430.219924.8542Neighbours41BLASTN+4431235.gbk