Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_016901: Shewanella baltica OS678 chromosome, complete genome

NCBI: NC_016901

Host Lineage: Shewanella baltica; Shewanella; Shewanellaceae; Alteromonadales; Proteobacteria; Bacteria

General Information: Environment: Marine; Temp: Mesophile; Temp: 4C. This genus includes species that inhabit a wide range of environments and are capable of utilizing a wide variety of electron acceptors during anaerobic respiration including some insoluble metal oxides while using very few carbon sources such as lactate or acetate. This group of organisms have been studied extensively for their electron transport systems.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
141467043372819059Island text1.6131330.879154.7296Neighbours42BLASTN414670.gbk
268087071497034101Island text1.6276138.226550.0137Neighbours21BLASTN+680870.gbk
372400075364129642Island text2.3063829.444319.4847Neighbours21BLASTN+724000.gbk
41367443*138862621184Island text1.6805337.048151.6039Neighbours21BLASTN1367443.gbk
51527877*155069122815Island text3.0413330.863715.4017Neighbours21BLASTN1527877.gbk
61885694190889923206Island text4.0575432.927717.2735Neighbours42BLASTN+1885694.gbk
72070121209199021870Island text1.595535.249650.7387Neighbours21BLASTN+2070121.gbk
82542110256709924990Island text1.5329237.484853.35Neighbours21BLASTN+2542110.gbk
92594942262681031869Island text1.6324729.458537.8487Neighbours41BLASTN+2594942.gbk
102661971268053618566Island text1.8563729.350138.2507Neighbours21BLASTN+2661971.gbk
112916988*293859921612Island text1.5690229.055233.2501Neighbours21BLASTN2916988.gbk
123430401*345064020240Island text1.7871530.38428.9393Neighbours21BLASTN+3430401.gbk
133530248355109920852Island text2.9157732.586225.2607Neighbours21BLASTN3530248.gbk
143936944395820021257Island text1.6896530.245125.0789Neighbours21BLASTN3936944.gbk
154039335406212022786Island text1.5824628.830316.0738Neighbours42BLASTN+4039335.gbk
165130147516858038434Island text2.1885330.376321.4409Neighbours21BLASTN+5130147.gbk