Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_016893: Wigglesworthia glossinidia endosymbiont of Glossina morsitans

NCBI: NC_016893

Host Lineage: Wigglesworthia glossinidia; Wigglesworthia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This organism is the obligate endosymbiont for the tsetse fly Glossina brevipalpis, Glossina tachinoides, Glossina palpalis palpalis, and Glossina austeni. The tsetse fly is a vector for African trypanosomes, and is the main transmitter of deadly diseases in animals and humans in Africa. The fly feeds on a restricted diet, exclusively consisting of vertebrate blood, and lacks certain metabolic compounds needed for survival and reproduction. To complement this lack in nutrients, the tsetse fly relies mainly on the intracellular bacterial symbiont, Wigglesworthia glossinidia for its viability and fecundity.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1432346679023557Island text1.6397812.583120.2989Neighbours21BLASTN43234.gbk
2135845*16066624822Island text3.1607915.722721.6088Neighbours21BLASTN+135845.gbk
3181951*20495823008Island text1.7617910.098615.7866Neighbours21BLASTN181951.gbk
4218376*24301524640Island text1.7754612.83421.8501Neighbours21BLASTN218376.gbk
5563890*58409920210Island text1.612488.9598416.1674Neighbours21BLASTN563890.gbk
6694587*72249927913Island text2.8544714.797123.2281Neighbours21BLASTN+694587.gbk