Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_016887: Nocardia cyriacigeorgica GUH-2, complete genome

NCBI: NC_016887

Host Lineage: Nocardia cyriacigeorgica; Nocardia; Nocardiaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Isolated from a fatal human nocardiosis case at Washington DC, USA in the 1970s. Human pathogen. Nocardia cyriacigeorgica is a filamentous actinobacteria, frequently isolated from diseased human and animal tissues. N. cyriacigeorgica is the most prevalent species responsible for nocardiosis in North America, while placing fourth in France.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
155000*7944924450Island text1.7231118.657325.6994Neighbours11BLASTN55000.gbk
222178824569523908Island text1.5891616.995413.7337Neighbours11BLASTN+221788.gbk
351103453454123508Island text1.6344916.421416.8778Neighbours11BLASTN+511034.gbk
41001500103268231183Island text2.0557520.715822.8002Neighbours11BLASTN+1001500.gbk
51035458105779822341Island text1.4731915.976425.1394Neighbours11BLASTN+1035458.gbk
61093609*111963926031Island text2.5539521.865222.8587Neighbours11BLASTN+1093609.gbk
71680338*170417223835Island text1.5852113.053316.9935Neighbours11BLASTN1680338.gbk
81714664*176064045977Island text1.5514616.76828.889Neighbours11BLASTN+1714664.gbk
91949927199835248426Island text2.1426320.259422.2432Neighbours11BLASTN+1949927.gbk
102269177229551826342Island text1.5217515.279218.9138Neighbours11BLASTN+2269177.gbk
113160000*318667526676Island text1.9231319.868729.7064Neighbours11BLASTN+3160000.gbk
123201976322782725852Island text2.6019822.862527.948Neighbours11BLASTN+3201976.gbk
133255500328384128342Island text3.0599721.761926.9615Neighbours11BLASTN+3255500.gbk
143286436333270146266Island text1.6672616.815631.9788Neighbours11BLASTN+3286436.gbk
154343830436498621157Island text1.7582615.351426.9123Neighbours11BLASTN4343830.gbk
164403872*442622322352Island text2.0553719.800924.4372Neighbours11BLASTN4403872.gbk
175295120*536006164942Island text1.8353316.933223.953Neighbours11BLASTN+5295120.gbk
185607272*563012922858Island text1.6301816.454325.36Neighbours11BLASTN5607272.gbk
195988878601277823901Island text1.6278615.503419.4664Neighbours11BLASTN5988878.gbk