Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_016884: Sulfobacillus acidophilus DSM 10332 chromosome, complete genome

NCBI: NC_016884

Host Lineage: Sulfobacillus acidophilus; Sulfobacillus; Clostridiales Family XVII; Clostridiales; Firmicutes; Bacteria

General Information: Country: United Kingdom; Environment: Soil; Isolation: coal spoil heap; Temp: Thermophile; Temp: 45C. Sulfobacillus acidophilus was first isolated from a coal spoil heap in the United Kingdom. This orgainism is an acidophilic sulfur- and iron-oxidizing bacterium capable of autotrophic growth on iron and sulfur.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
170955*9462123667Island text1.8269635.984328.8839Neighbours342BLASTN70955.gbk
2157894*18258524692Island text1.693123.787135.1626Neighbours342BLASTN+157894.gbk
3256598*28068724090Island text1.7537625.705837.7186Neighbours342BLASTN256598.gbk
458778961424026452Island text1.9809828.669945.8458Neighbours342BLASTN+587789.gbk
564100066509924100Island text2.0625531.234433.7108Neighbours342BLASTN+641000.gbk
676000078209922100Island text1.4584127.748137.8731Neighbours342+760000.gbk
781300083774124742Island text1.7332729.780942.016Neighbours342BLASTN813000.gbk
81201868122417922312Island text1.7871628.60129.0328Neighbours342BLASTN+1201868.gbk
92194419222310728689Island text3.0845239.482639.0702Neighbours342BLASTN+2194419.gbk
102568920259209923180Island text1.4890227.237451.0659Neighbours342BLASTN+2568920.gbk
112701217272520423988Island text1.527426.650731.9832Neighbours342BLASTN+2701217.gbk
122759226*278009920874Island text1.7977525.934533.311BLASTN+2759226.gbk
133219030327198252953Island text1.7597933.467231.5341Neighbours342BLASTN+3219030.gbk