Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_016863: Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1

NCBI: NC_016863

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1258044831822515Island text2.2163330.784915.1236Neighbours41BLASTN25804.gbk
233206035501522956Island text1.8081335.882435.1902Neighbours41BLASTN+332060.gbk
336740438679019387Island text1.5198230.587335.7778Neighbours41BLASTN+367404.gbk
460674262757520834Island text2.0902331.894521.3353Neighbours41BLASTN+606742.gbk
577673480504228309Island text3.5293443.42225.0443Neighbours41BLASTN+776734.gbk
6819478*83986120384Island text2.2125131.651321.1617Neighbours51BLASTN+819478.gbk
7920346*94293322588Island text2.1687537.075518.0808Neighbours41BLASTN+920346.gbk
81128381*114860820228Island text1.8232428.951820.173Neighbours51BLASTN1128381.gbk
91165232119242827197Island text1.8618532.939523.8478Neighbours41BLASTN+1165232.gbk
101277652*130554927898Island text2.4057136.722129.828Neighbours41BLASTN+1277652.gbk
111359769*138318123413Island text1.9234532.898620.1348Neighbours41BLASTN+1359769.gbk
121429516*146711237597Island text1.8315433.360634.2168Neighbours41BLASTN+1429516.gbk
131575488*159411618629Island text1.8552729.529424.9604Neighbours41BLASTN+1575488.gbk
141671428*169512323696Island text2.4372637.486122.0251Neighbours41BLASTN+1671428.gbk
151711832173426022429Island text1.6306430.25928.6028Neighbours41BLASTN+1711832.gbk
161905454*193432428871Island text2.0034936.989622.2122Neighbours41BLASTN+1905454.gbk
172029340205291323574Island text1.6874429.49915.9642Neighbours41BLASTN+2029340.gbk
182152739218671133973Island text4.089943.359527.7033Neighbours41BLASTN2152739.gbk
192324293*236507340781Island text1.7222637.073125.1105Neighbours51BLASTN+2324293.gbk
202721826274257820753Island text2.0110430.758423.5554Neighbours51BLASTN+2721826.gbk
212844883*290860063718Island text1.5035933.814147.8316Neighbours41BLASTN+2844883.gbk
222974333*303011655784Island text2.1612935.542326.0022Neighbours41BLASTN+2974333.gbk
233864000*388869424695Island text2.2135435.163525.4903Neighbours41BLASTN3864000.gbk
243905875*393095225078Island text1.6454340.269354.9397Neighbours41BLASTN+3905875.gbk
253933848395609922252Island text2.529239.05622.6784Neighbours51BLASTN+3933848.gbk
263967156399184924694Island text1.3588929.827319.838Neighbours41BLASTN+3967156.gbk
274431831446030128471Island text1.4000933.298939.0912Neighbours41BLASTN4431831.gbk
284513106453363520530Island text1.7098237.288125.064Neighbours41BLASTN+4513106.gbk