Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_016857: Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74

NCBI: NC_016857

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1258034831722515Island text2.2182431.015916.0799Neighbours41BLASTN25803.gbk
232984935451924671Island text1.8103336.363135.1504Neighbours41BLASTN+329849.gbk
3366908*38582118914Island text1.519729.857737.1848Neighbours41BLASTN+366908.gbk
460479262336118570Island text2.0441928.593121.4521Neighbours41BLASTN+604792.gbk
577564980395728309Island text3.7000343.130224.7313Neighbours41BLASTN+775649.gbk
681942983877519347Island text1.7431830.012830.4057Neighbours51BLASTN+819429.gbk
791926694185322588Island text2.0141437.308520.2869Neighbours41BLASTN+919266.gbk
81126693*114814821456Island text1.9585231.409630.0063Neighbours51BLASTN1126693.gbk
91163919*118544121523Island text1.9356529.997625.5512Neighbours41BLASTN+1163919.gbk
101276340*130423727898Island text2.4128137.113529.6477Neighbours41BLASTN+1276340.gbk
111358456*138209923644Island text1.9002532.254722.4753Neighbours41BLASTN+1358456.gbk
121428201145384425644Island text2.1669134.258730.832Neighbours41BLASTN1428201.gbk
131576636*159935422719Island text1.7798329.909417.7854Neighbours41BLASTN1576636.gbk
141670112169664226531Island text2.5099337.715120.6099Neighbours41BLASTN+1670112.gbk
151709695173232222628Island text1.6890434.970822.8225Neighbours41BLASTN+1709695.gbk
161903426*193229628871Island text2.0085737.427422.1788Neighbours41BLASTN+1903426.gbk
172027311205088423574Island text1.6964329.763515.4343Neighbours41BLASTN+2027311.gbk
182150709218468133973Island text4.0873943.323227.7667Neighbours41BLASTN+2150709.gbk
192325190*236304437855Island text1.7145333.544923.8868Neighbours51BLASTN+2325190.gbk
202719779273972419946Island text2.0141631.4324.8416Neighbours51BLASTN+2719779.gbk
212871689*293297861290Island text1.5222331.363527.5435Neighbours41BLASTN+2871689.gbk
222943912296545621545Island text1.7719931.180832.7576Neighbours51BLASTN+2943912.gbk
233028421*308418855768Island text2.2077335.033425.7899Neighbours41BLASTN+3028421.gbk
243924000*394882124822Island text1.6784141.001958.4267Neighbours41BLASTN3924000.gbk
253993864401609922236Island text2.5225239.18922.8611Neighbours51BLASTN3993864.gbk
264025767405186426098Island text1.3944233.15938.1411Neighbours41BLASTN+4025767.gbk
274491976452044628471Island text1.7031836.397525.4651Neighbours41BLASTN4491976.gbk
284573173*459510121929Island text2.1730736.691537.8691Neighbours41BLASTN+4573173.gbk