Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_016856: Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S

NCBI: NC_016856

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1258034831722515Island text2.2104531.015916.0799Neighbours41BLASTN25803.gbk
233277135572622956Island text1.8012736.328136.0261Neighbours41BLASTN+332771.gbk
3365665*38750121837Island text1.4353630.724839.7483Neighbours41BLASTN+365665.gbk
4606742*62757620835Island text2.0740731.696421.2297Neighbours41BLASTN+606742.gbk
577673580504328309Island text3.5213543.317325.1414Neighbours41BLASTN+776735.gbk
6819482*83986120380Island text2.2043131.651321.1617Neighbours51BLASTN+819482.gbk
792105794364422588Island text2.0752837.622819.1095Neighbours41BLASTN+921057.gbk
81128715*115017021456Island text1.9822931.047829.5068Neighbours51BLASTN1128715.gbk
91165941*118746321523Island text1.955730.216426.1725Neighbours41BLASTN+1165941.gbk
101326503135735930857Island text2.2595436.92326.9553Neighbours41BLASTN+1326503.gbk
111411579*143499123413Island text1.9481733.270119.8911Neighbours41BLASTN+1411579.gbk
121481325*151892137597Island text1.8214833.398334.7925Neighbours41BLASTN+1481325.gbk
131621279*164311421836Island text1.7379629.440431.5751Neighbours41BLASTN+1621279.gbk
141723236*174659923364Island text2.5270738.043421.7642Neighbours41BLASTN+1723236.gbk
151763640178609922460Island text1.631331.189229.7844Neighbours41BLASTN+1763640.gbk
161957263*198613328871Island text1.9665536.636722.0008Neighbours41BLASTN+1957263.gbk
172085283210472119439Island text1.6874730.252917.6879Neighbours41BLASTN+2085283.gbk
182204546223851833973Island text4.0035742.844127.9113Neighbours41BLASTN2204546.gbk
192379027*241688137855Island text1.7297233.655622.2137Neighbours51BLASTN+2379027.gbk
202773995279366819674Island text2.0563831.507824.2645Neighbours51BLASTN+2773995.gbk
212812905*283323020326Island text1.7378930.885718.4378Neighbours41BLASTN+2812905.gbk
222896630*296464568016Island text1.5027834.586648.3884Neighbours41BLASTN+2896630.gbk
233026426*308186455439Island text2.2494435.851824.5567Neighbours41BLASTN+3026426.gbk
243916500*394119824699Island text2.2274634.911625.2664Neighbours41BLASTN3916500.gbk
253985597400820322607Island text1.5999839.360456.0939Neighbours51BLASTN+3985597.gbk
264019549404424224694Island text2.4645739.2123.1096Neighbours41BLASTN+4019549.gbk
274482845451269529851Island text1.4554931.736431.6604Neighbours41BLASTN4482845.gbk
284563435*458732923895Island text1.705336.809722.2823Neighbours41BLASTN+4563435.gbk