Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_016843: Treponema pallidum subsp. pertenue str. Gauthier chromosome,

NCBI: NC_016843

Host Lineage: Treponema pallidum; Treponema; Spirochaetaceae; Spirochaetales; Spirochaetes; Bacteria

General Information: This strain was isolated in Brazzaville, the Republic of Congo in 1960. Treponema pallidum subsp. pertenue causes chronic and disfiguring illness called yaws. The disease starts as a skin infection causing persistent ulcers and progresses to form tumor-like masses. This disease tends to infect children and is common in rural areas in Africa, Southeast Asia and equatorial South America.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
11*3293632936Island text1.6670733.752151.1431Neighbours10BLASTN+1.gbk
254714957681029662Island text1.719433.902753.9073Neighbours10BLASTN+547149.gbk
3747950*76754419595Island text1.8151142.017722.9257Neighbours10BLASTN+747950.gbk
4775371*79842523055Island text1.628635.326533.9201Neighbours10BLASTN+775371.gbk
5950000*96803018031Island text1.8288735.617642.4142Neighbours10BLASTN+950000.gbk