Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_016842: Treponema pallidum subsp. pertenue str. SamoaD chromosome, complete

NCBI: NC_016842

Host Lineage: Treponema pallidum; Treponema; Spirochaetaceae; Spirochaetales; Spirochaetes; Bacteria

General Information: This strain was isolated in Western Samoa in 1953. Treponema pallidum subsp. pertenue causes the chronic and disfiguring illness called yaws. The disease starts as a skin infection causing persistent ulcers and progresses to form tumor-like masses. This disease tends to infect children and is common in rural areas in Africa, Southeast Asia and equatorial South America.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
11*3293632936Island text1.6692933.670151.1431Neighbours10BLASTN+1.gbk
254666157632229662Island text1.8163133.941855.0935Neighbours10BLASTN+546661.gbk
3748419*76875220334Island text1.8647733.712353.1673Neighbours10BLASTN+748419.gbk
4775368*79492119554Island text1.8317242.001522.1456Neighbours10BLASTN+775368.gbk
5949899*96792218024Island text1.6532935.197541.2109Neighbours10BLASTN+949899.gbk