Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_016835: Rahnella aquatilis CIP 78.65 = ATCC 33071 plasmid pRahaq201,

NCBI: NC_016835

Host Lineage: Rahnella aquatilis; Rahnella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Environment: Host; Isolation: drinking water; Temp: Mesophile. Rahnella aquatilis is a facultatively anaerobic, nitrogen-fixing, gram-negative rod from the Enterobacteriaceae family. It is usually found in fresh water. It is sometimes found in human clinical specimens.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
111862218622Island text2.0847240.19131.079Neighbours53BLASTN1.gbk
212875715017121415Island text1.6779132.675320.8447Neighbours41BLASTN+128757.gbk
340548242823222751Island text1.5152828.708730.1864Neighbours51BLASTN+405482.gbk