Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_016831: Salmonella enterica subsp. enterica serovar Gallinarum/pullorum

NCBI: NC_016831

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Salmonella enterica serovar Pullorum is a chicken-adapted pathogen, causing pullorum disease. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1257604831522556Island text2.2155631.122317.9437Neighbours41BLASTN25760.gbk
253140455259921196Island text2.1487234.176622.3805Neighbours41BLASTN+531404.gbk
3687549*71274425196Island text1.6028335.66726.5877Neighbours51BLASTN+687549.gbk
485497389059935627Island text4.1741644.426528.698Neighbours41BLASTN+854973.gbk
5947281*99409946819Island text4.213346.895220.6034Neighbours41BLASTN+947281.gbk
61083871*111038826518Island text2.5203239.223631.8908Neighbours41BLASTN+1083871.gbk
71166868*118463017763Island text1.8307530.696718.096Neighbours41BLASTN1166868.gbk
81236786127225135466Island text1.8815934.870734.5684Neighbours41BLASTN+1236786.gbk
91468691149522426534Island text2.565939.441722.0101Neighbours41BLASTN+1468691.gbk
101690811171640225592Island text2.0508937.72424.5102Neighbours41BLASTN+1690811.gbk
111734292176004125750Island text1.5044133.544334.4569Neighbours41BLASTN+1734292.gbk
121865681188957123891Island text2.0371735.657624.144Neighbours51BLASTN+1865681.gbk
131905289192309917811Island text1.6998831.259131.2096Neighbours41BLASTN+1905289.gbk
141950650*196939618747Island text1.7994930.122229.3154Neighbours41BLASTN1950650.gbk
152108557213332424768Island text1.9696637.057718.8059Neighbours41BLASTN+2108557.gbk
162209834*223219522362Island text1.8010935.688221.4947Neighbours41BLASTN+2209834.gbk
172402893242429621404Island text2.2066733.135619.7669Neighbours41BLASTN+2402893.gbk
182627515265180224288Island text2.1959938.051428.8476Neighbours41BLASTN2627515.gbk
192667561270072833168Island text1.796136.46138.5477Neighbours41BLASTN2667561.gbk
202779864280660026737Island text2.4699136.633924.766Neighbours51BLASTN+2779864.gbk
212867766292083153066Island text2.1138335.848626.3698Neighbours41BLASTN+2867766.gbk
223779611380311323503Island text1.5460436.448255.6615Neighbours51BLASTN3779611.gbk
233875134*390139726264Island text1.3569533.171254.2697Neighbours41BLASTN3875134.gbk
244286000431463228633Island text1.639935.871326.3748Neighbours41BLASTN4286000.gbk
254367000*438572418725Island text2.5106140.131524.3907Neighbours41BLASTN+4367000.gbk
264517850*453638118532Island text2.2284636.728937.6532Neighbours41BLASTN+4517850.gbk
274556761457657019810Island text1.5445831.055439.7978Neighbours41BLASTN+4556761.gbk