Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_016829: Mycoplasma hyorhinis GDL-1 chromosome, complete genome

NCBI: NC_016829

Host Lineage: Mycoplasma hyorhinis; Mycoplasma; Mycoplasmataceae; Mycoplasmatales; Tenericutes; Bacteria

General Information: Swine pathogen. Infection with mycoplasma is a common problem in cell cultures, with Mycoplasma hyorhinis being the predominant species.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
166000*8466018661Island text2.959915.90823.0241Neighbours21BLASTN66000.gbk
218337720853225156Island text1.4992511.733918.1752Neighbours21BLASTN183377.gbk
3308000*33103023031Island text1.6808212.284322.1556Neighbours21BLASTN308000.gbk
4483860*50712423265Island text2.0904510.642612.7847Neighbours21BLASTN483860.gbk
5624971*64649321523Island text2.1534214.289123.149Neighbours21BLASTN624971.gbk
680116682614824983Island text1.607414.928416.8126Neighbours21BLASTN801166.gbk