Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_016826: Streptococcus infantarius subsp. infantarius CJ18 chromosome,

NCBI: NC_016826

Host Lineage: Streptococcus infantarius; Streptococcus; Streptococcaceae; Lactobacillales; Firmicutes; Bacteria

General Information: Bacterium isolated from human specimens or from food products. Normal gastrointestinal bacterium. Isolated from spontaneously fermented Kenyan camel milk (suusac).



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1929259*95209922841Island text2.5325525.854743.9239Neighbours21BLASTN+929259.gbk
21783828*180625322426Island text2.2595527.399141.679Neighbours21BLASTN+1783828.gbk