Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_016818: Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, complete

NCBI: NC_016818

Host Lineage: Rahnella aquatilis; Rahnella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Environment: Host; Isolation: drinking water; Temp: Mesophile; Isolation:drinking water. Rahnella aquatilis is a facultatively anaerobic, nitrogen-fixing, gram-negative rod from the Enterobacteriaceae family. It is usually found in fresh water. It is sometimes found in human clinical specimens.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1362548*38623923692Island text1.5783235.251323.4921Neighbours41BLASTN362548.gbk
254680557282626022Island text2.0271239.776727.5042Neighbours41BLASTN546805.gbk
363375066709933350Island text2.4533943.356825.7962Neighbours41BLASTN+633750.gbk
4749673*77237122699Island text1.6201235.926623.9445Neighbours41BLASTN749673.gbk
5859181*88753828358Island text1.5014540.825653.0272Neighbours41BLASTN+859181.gbk
61291665131636424700Island text1.8684938.261426.9357Neighbours41BLASTN+1291665.gbk
71605918163166525748Island text1.8745738.021928.5409Neighbours41BLASTN+1605918.gbk
81795576184759952024Island text2.0916341.7624.2615Neighbours41BLASTN+1795576.gbk
91927500194622518726Island text2.336639.18226.7878Neighbours41BLASTN1927500.gbk
101963875198988126007Island text1.7664631.906622.6093Neighbours51BLASTN1963875.gbk
112542295*256955827264Island text1.6859340.860326.7505Neighbours51BLASTN+2542295.gbk
122836851*287859941749Island text2.1458238.968526.7685Neighbours41BLASTN+2836851.gbk
132927500296339135892Island text4.5352251.22218.6367Neighbours41BLASTN2927500.gbk
143114460313238317924Island text1.6633236.911926.2157Neighbours41BLASTN+3114460.gbk
153148000*317075722758Island text1.5090732.149831.2888Neighbours41BLASTN+3148000.gbk
163736213*376138825176Island text1.4696236.600229.693Neighbours41BLASTN+3736213.gbk
173816000383793921940Island text1.7307435.950533.4524Neighbours41BLASTN3816000.gbk
183851542*388119329652Island text1.4851133.438732.5923Neighbours41BLASTN+3851542.gbk
193887000*392491037911Island text2.121639.769327.9793Neighbours41BLASTN+3887000.gbk
203986570400872722158Island text2.770744.015425.0305Neighbours41BLASTN+3986570.gbk
214215836*424069224857Island text1.7151435.736121.4566Neighbours41BLASTN+4215836.gbk