Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_016817: Pantoea ananatis LMG 5342 plasmid pPANA10, complete sequence

NCBI: NC_016817

Host Lineage: Pantoea ananatis; Pantoea; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Pantoea ananatis is an emerging plant pathogen which causes disease on a broad range of plant hosts including maize, onion, rice, pineapple, melons and Eucalyptus.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
118500021308628087Island text2.8161442.077421.8774Neighbours41BLASTN+185000.gbk