Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_016816: Pantoea ananatis LMG 5342, complete genome

NCBI: NC_016816

Host Lineage: Pantoea ananatis; Pantoea; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Pantoea ananatis is an emerging plant pathogen which causes disease on a broad range of plant hosts including maize, onion, rice, pineapple, melons and Eucalyptus.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1127802*17411946318Island text1.5551237.34854.6352Neighbours41BLASTN+127802.gbk
2674171*69520021030Island text2.0332935.475123.461Neighbours41BLASTN+674171.gbk
3792460*82809935640Island text1.3917836.825146.9546Neighbours41BLASTN+792460.gbk
41137904116483726934Island text1.5956537.149451.6912Neighbours41BLASTN+1137904.gbk
51545354*158497639623Island text1.7018932.854222.7281Neighbours41BLASTN+1545354.gbk
61676460*171414337684Island text3.4500747.309324.1502Neighbours41BLASTN+1676460.gbk
71823127184663223506Island text1.573837.968156.5507Neighbours41BLASTN1823127.gbk
81852659187159918941Island text1.6407631.276324.7564Neighbours41BLASTN1852659.gbk
91912366*195610643741Island text4.4208649.904423.5469Neighbours41BLASTN+1912366.gbk
101970189199409923911Island text3.8549146.488724.3599Neighbours41BLASTN+1970189.gbk
112073677209949825822Island text1.5721330.876125.5451Neighbours41BLASTN+2073677.gbk
122508204253319724994Island text1.521131.067632.7689Neighbours41BLASTN+2508204.gbk
132684336*272259938264Island text2.0711936.434122.3524Neighbours41BLASTN+2684336.gbk
142782373280617123799Island text1.7345831.192226.3674Neighbours41BLASTN+2782373.gbk
152925459295088825430Island text2.1743636.265823.3581Neighbours41BLASTN+2925459.gbk
162953530*299029336764Island text2.1648736.418421.0428Neighbours41BLASTN+2953530.gbk
173333000336336530366Island text5.6748653.712316.4015Neighbours41BLASTN+3333000.gbk
183373950*339395320004Island text2.7084843.364619.7668Neighbours51BLASTN3373950.gbk
193917446393977622331Island text2.4798340.074827.0833Neighbours51BLASTN+3917446.gbk
203952000397864026641Island text2.1851239.477823.5155Neighbours41BLASTN+3952000.gbk
213974895*400124726353Island text2.8402744.312832.9814Neighbours41BLASTN+3974895.gbk
224129299417609946801Island text1.8554632.921927.8268Neighbours51BLASTN+4129299.gbk
234232680425221919540Island text1.8672630.833521.3059Neighbours51BLASTN+4232680.gbk