Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_016804: Mycobacterium bovis BCG str. Mexico chromosome, complete genome

NCBI: NC_016804

Host Lineage: Mycobacterium bovis; Mycobacterium; Mycobacteriaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Like other closely related Actinomycetales, such as Nocardia and Corynebacterium, mycobacteria have unusually high genomic DNA GC content and are capable of producing mycolic acids as major components of their cell wall. This bacterium is the causative agent of classic bovine tuberculosis, but it can also cause the disease in humans, especially if contaminated milk is consumed without prior pasteurization. The Mycobacterium bovis complex is a diverse group of species, serovars and morphotypes that cause tuberculosis-like diseases in animals and humans. Pasteurization of milk is a major preventitive factor in transmission of bovine tuberculosis to humans. However, spreading the disease through milk and dairy products is still a concern in underdeveloped countries where pasteurization is not practiced.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
147750050076823269Island text1.8378519.255628.4992Neighbours11BLASTN+477500.gbk
283150084997518476Island text1.7471316.583620.2308Neighbours11BLASTN+831500.gbk
31095846*111791622071Island text1.7338118.962828.6664Neighbours11BLASTN+1095846.gbk
41679357170259023234Island text2.2988924.020827.8832Neighbours11BLASTN+1679357.gbk
51846388187089524508Island text1.7901420.131925.5072Neighbours11BLASTN+1846388.gbk
62254979*227809923121Island text1.7454919.74835.031Neighbours11BLASTN2254979.gbk
72560000*258226522266Island text1.4541416.962529.0718Neighbours11BLASTN+2560000.gbk
82735897276004124145Island text1.4292619.169520.9404Neighbours11BLASTN2735897.gbk
93049631306995020320Island text1.4573818.585822.5911Neighbours11BLASTN+3049631.gbk
103221818324382322006Island text1.5166921.078635.0012Neighbours11BLASTN+3221818.gbk
113407859342744119583Island text1.5364616.782230.6929Neighbours11BLASTN+3407859.gbk
123753243377120417962Island text1.5686616.662616.7865Neighbours11BLASTN+3753243.gbk