Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_016803: Desulfovibrio desulfuricans ND132 chromosome, complete genome

NCBI: NC_016803

Host Lineage: Desulfovibrio desulfuricans; Desulfovibrio; Desulfovibrionaceae; Desulfovibrionales; Proteobacteria; Bacteria

General Information: Desulfovibrio species are sulfate-reducing bacteria which reduce sulfate to sulfide and are found in soil, freshwater, saltwater and the intestinal tract of animals. These organisms grow anaerobically and utilize a wide variety of electron acceptors, including sulfate, sulfur, nitrate, and nitrite, as well as others. A number of toxic metals are reduced, including uranium (VI), chromium (VI) and iron (III), making these organisms of interest as bioremediators. These organisms are responsible for the production of poisonous hydrogen sulfide gas in marine sediments and in terrestrial environments such as drilling sites for petroleum products.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
119817823295934782Island text1.9530927.201132.1943Neighbours11BLASTN+198178.gbk
2465453*48809922647Island text3.8683626.488339.1102Neighbours11BLASTN+465453.gbk
3593484*61759924116Island text1.482722.10621.8175Neighbours11BLASTN+593484.gbk
41027017*106213935123Island text2.0919627.315627.3285Neighbours310BLASTN+1027017.gbk
51646342*168493638595Island text3.5982941.754627.3842Neighbours11BLASTN+1646342.gbk
62431672*246605434383Island text3.1519434.875724.8519Neighbours11BLASTN+2431672.gbk
72612694*264203329340Island text2.2243228.893229.4466Neighbours11BLASTN+2612694.gbk
83502749353136428616Island text1.4004326.690235.1383Neighbours310BLASTN+3502749.gbk
93795916*381850522590Island text1.5511221.598430.8076Neighbours11BLASTN3795916.gbk