Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_016802: Corynebacterium diphtheriae HC02 chromosome, complete genome

NCBI: NC_016802

Host Lineage: Corynebacterium diphtheriae; Corynebacterium; Corynebacteriaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: They may be found as members of the normal microflora of humans, where these bacteria find a suitable niche in virtually every anatomic site. This organism is the best known and most widely studied species of the genus. It is the causal agent of the disease diphtheria, a deadly infectious disease spreading from person to person by respiratory droplets from the throat through coughing and sneezing. In the course of infection, the bacteria invade and colonize tissues of the upper respiratory tract, proliferate and produce exotoxin that inhibits protein synthesis and causes local lesions and systemic degenerative changes in the heart, muscles, peripheral nerves, liver and other vital organs.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
122134324401522673Island text1.7919137.798639.4925BLASTN+221343.gbk
21186326120534819023Island text1.9497336.054244.9716Neighbours17BLASTN+1186326.gbk
31212726*124394431219Island text1.8877837.650846.1251Neighbours17BLASTN+1212726.gbk
41256287130709950813Island text1.6164133.732129.3245Neighbours17BLASTN+1256287.gbk
51317365*1453864136500Island text1.6953434.648333.1865Neighbours17BLASTN+1317365.gbk
61615748163460418857Island text1.7000434.472539.2007Neighbours17BLASTN1615748.gbk
71709840173456024721Island text1.8501935.107736.1715Neighbours13BLASTN+1709840.gbk
81815098*183915724060Island text1.6324635.260648.9554Neighbours19BLASTN+1815098.gbk
92035723205909923377Island text1.7300834.145343.7116BLASTN+2035723.gbk