Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_016801: Corynebacterium diphtheriae C7 (beta) chromosome, complete genome

NCBI: NC_016801

Host Lineage: Corynebacterium diphtheriae; Corynebacterium; Corynebacteriaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: They may be found as members of the normal microflora of humans, where these bacteria find a suitable niche in virtually every anatomic site. This organism is the best known and most widely studied species of the genus. It is the causal agent of the disease diphtheria, a deadly infectious disease spreading from person to person by respiratory droplets from the throat through coughing and sneezing. In the course of infection, the bacteria invade and colonize tissues of the upper respiratory tract, proliferate and produce exotoxin that inhibits protein synthesis and causes local lesions and systemic degenerative changes in the heart, muscles, peripheral nerves, liver and other vital organs.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
136000*5359917600Island text1.5964232.611941.96BLASTN+36000.gbk
2170876*20048829613Island text1.9542539.861139.3412BLASTN+170876.gbk
3394400*41438319984Island text1.9836937.378437.2335BLASTN+394400.gbk
41123733*114641222680Island text1.8989633.423549.8904BLASTN+1123733.gbk
51255611*132384868238Island text1.841136.060245.1877Neighbours17BLASTN+1255611.gbk
61333860*135375819899Island text1.6418834.715729.7616Neighbours17BLASTN1333860.gbk
71361597*141599954403Island text1.5591733.99241.7834Neighbours17BLASTN1361597.gbk
81422500*150100178502Island text1.6760635.331132.6438Neighbours17BLASTN+1422500.gbk
91782401180191619516Island text1.8177334.793634.7142Neighbours14BLASTN+1782401.gbk
102271779*229606824290Island text1.5671833.374949.9878Neighbours17BLASTN2271779.gbk