Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_016800: Corynebacterium diphtheriae BH8 chromosome, complete genome

NCBI: NC_016800

Host Lineage: Corynebacterium diphtheriae; Corynebacterium; Corynebacteriaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: They may be found as members of the normal microflora of humans, where these bacteria find a suitable niche in virtually every anatomic site. This organism is the best known and most widely studied species of the genus. It is the causal agent of the disease diphtheria, a deadly infectious disease spreading from person to person by respiratory droplets from the throat through coughing and sneezing. In the course of infection, the bacteria invade and colonize tissues of the upper respiratory tract, proliferate and produce exotoxin that inhibits protein synthesis and causes local lesions and systemic degenerative changes in the heart, muscles, peripheral nerves, liver and other vital organs.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1163436*18329319858Island text2.8166935.457258.4785Neighbours14BLASTN163436.gbk
269475071870523956Island text1.8349439.350835.0946Neighbours112BLASTN+694750.gbk
3979494*100430724814Island text2.1300340.464627.0953Neighbours17BLASTN979494.gbk
41219121123814619026Island text1.9013936.933145.9651Neighbours17BLASTN+1219121.gbk
51243000*131354370544Island text1.9292534.283838.47Neighbours17BLASTN+1243000.gbk
61317276*133719519920Island text1.678734.457531.1772Neighbours17BLASTN1317276.gbk
71344189136356419376Island text1.5718733.584644.0188Neighbours17BLASTN1344189.gbk
81378728*139946320736Island text1.674933.684932.775Neighbours17BLASTN+1378728.gbk
91411000*146874657747Island text1.5796435.934533.2774Neighbours17BLASTN+1411000.gbk
101477937*150011322177Island text1.7863434.801828.5694Neighbours17BLASTN+1477937.gbk
111639373166280123429Island text1.7794735.956426.1309Neighbours171639373.gbk
122058192207759919408Island text1.4802536.107740.7358BLASTN2058192.gbk
132127200*214811220913Island text1.6942934.287946.1475Neighbours14BLASTN2127200.gbk
142239626*226442224797Island text1.9793537.130945.1116Neighbours17BLASTN2239626.gbk