Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_016799: Corynebacterium diphtheriae 31A chromosome, complete genome

NCBI: NC_016799

Host Lineage: Corynebacterium diphtheriae; Corynebacterium; Corynebacteriaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: They may be found as members of the normal microflora of humans, where these bacteria find a suitable niche in virtually every anatomic site. This organism is the best known and most widely studied species of the genus. It is the causal agent of the disease diphtheria, a deadly infectious disease spreading from person to person by respiratory droplets from the throat through coughing and sneezing. In the course of infection, the bacteria invade and colonize tissues of the upper respiratory tract, proliferate and produce exotoxin that inhibits protein synthesis and causes local lesions and systemic degenerative changes in the heart, muscles, peripheral nerves, liver and other vital organs.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1167362*19074123380Island text1.5008534.283841.7225Neighbours17BLASTN+167362.gbk
2198091*23183833748Island text1.7089937.929450.9302Neighbours13BLASTN+198091.gbk
326731028999622687Island text1.6867637.02538.1933BLASTN+267310.gbk
473184975445822610Island text1.8605436.547937.1665Neighbours14BLASTN+731849.gbk
51268706*133936670661Island text1.6270335.014451.2498Neighbours17BLASTN+1268706.gbk
61343020*142886685847Island text1.8415836.68646.4151Neighbours17BLASTN+1343020.gbk
71439000*149838459385Island text1.7102733.987731.0996Neighbours17BLASTN+1439000.gbk
81501578*152161420037Island text1.6413435.886137.3024Neighbours17BLASTN+1501578.gbk
91667338169076823431Island text1.8858536.036430.7141Neighbours171667338.gbk
101787687181097223286Island text1.7732435.96325.6456Neighbours19BLASTN+1787687.gbk
112303500*232212918630Island text1.4777635.992239.0608BLASTN2303500.gbk