Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_016791: Clostridium sp. BNL1100 chromosome, complete genome

NCBI: NC_016791

Host Lineage: Clostridium; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: Temp: Mesophile. Isolated from corn stover. Nitrogen fixation.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
11079322109840219081Island text4.9163431.610754.1174BLASTN1079322.gbk
21132451*115178919339Island text4.599331.467954.1479Neighbours37BLASTN+1132451.gbk
31266404128602519622Island text1.5157729.024832.9151Neighbours37BLASTN+1266404.gbk
41341858*136309921242Island text1.6300325.243240.1876Neighbours21BLASTN+1341858.gbk
51454483147470220220Island text1.5641227.507939.5953Neighbours21BLASTN+1454483.gbk
61620858164842727570Island text2.4525425.575942.9529Neighbours21BLASTN1620858.gbk
71980844*200631325470Island text2.0730626.427543.5833Neighbours21BLASTN1980844.gbk
82215164224112925966Island text2.4288927.006748.16Neighbours21BLASTN2215164.gbk
92888319291279524477Island text1.7838524.662644.0736Neighbours33BLASTN2888319.gbk
102983349301285529507Island text3.2720130.169348.8175Neighbours37BLASTN2983349.gbk
113807740382980722068Island text3.4899528.336349.3145Neighbours21BLASTN3807740.gbk
123851454387462423171Island text2.9103426.039646.918Neighbours21BLASTN+3851454.gbk
133891272*391788926618Island text3.3004528.747647.1549Neighbours23BLASTN3891272.gbk
143953972*399212038149Island text2.3671237.102841.625Neighbours23BLASTN+3953972.gbk
154038069406447126403Island text2.3333128.563651.0308Neighbours21BLASTN+4038069.gbk