Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_016790: Corynebacterium diphtheriae VA01 chromosome, complete genome

NCBI: NC_016790

Host Lineage: Corynebacterium diphtheriae; Corynebacterium; Corynebacteriaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: They may be found as members of the normal microflora of humans, where these bacteria find a suitable niche in virtually every anatomic site. This organism is the best known and most widely studied species of the genus. It is the causal agent of the disease diphtheria, a deadly infectious disease spreading from person to person by respiratory droplets from the throat through coughing and sneezing. In the course of infection, the bacteria invade and colonize tissues of the upper respiratory tract, proliferate and produce exotoxin that inhibits protein synthesis and causes local lesions and systemic degenerative changes in the heart, muscles, peripheral nerves, liver and other vital organs.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1312405047219233Island text1.6915634.761148.8306Neighbours11BLASTN+31240.gbk
2134951*16059525645Island text2.3449247.334636.6395BLASTN+134951.gbk
31152249*117284720599Island text1.9582535.151645.5868Neighbours17BLASTN+1152249.gbk
41177349*121359936251Island text1.849136.781945.3244Neighbours17BLASTN+1177349.gbk
51218596125070832113Island text1.5764133.484323.2976Neighbours17BLASTN+1218596.gbk
61259356*131680257447Island text1.6748834.423932.2656Neighbours17BLASTN1259356.gbk
71319060*134214523086Island text1.6775835.07628.6383Neighbours17BLASTN+1319060.gbk
81345638*140132855691Island text1.8135236.928235.9961Neighbours17BLASTN+1345638.gbk
91417421*143671519295Island text1.5395533.979134.7484Neighbours17BLASTN+1417421.gbk
101480441*149991819478Island text1.8300235.051533.6442Neighbours17BLASTN+1480441.gbk
111581411160409922689Island text1.7681235.717126.9257Neighbours171581411.gbk
121702856172571622861Island text1.5904232.706143.1417Neighbours13BLASTN+1702856.gbk
131758000*177831420315Island text1.48936.010538.0375Neighbours17BLASTN+1758000.gbk
141976593199676220170Island text1.7658335.465348.3722BLASTN+1976593.gbk
152027332204575818427Island text1.5515937.80432.6654Neighbours14BLASTN2027332.gbk
162166000*218849722498Island text1.8785533.946452.3876Neighbours11BLASTN+2166000.gbk