Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_016789: Corynebacterium diphtheriae PW8 chromosome, complete genome

NCBI: NC_016789

Host Lineage: Corynebacterium diphtheriae; Corynebacterium; Corynebacteriaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: They may be found as members of the normal microflora of humans, where these bacteria find a suitable niche in virtually every anatomic site. This organism is the best known and most widely studied species of the genus. It is the causal agent of the disease diphtheria, a deadly infectious disease spreading from person to person by respiratory droplets from the throat through coughing and sneezing. In the course of infection, the bacteria invade and colonize tissues of the upper respiratory tract, proliferate and produce exotoxin that inhibits protein synthesis and causes local lesions and systemic degenerative changes in the heart, muscles, peripheral nerves, liver and other vital organs.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1199503*22754828046Island text1.9511635.636658.4298BLASTN+199503.gbk
222469724848623790Island text1.4513634.52745.2918Neighbours19BLASTN+224697.gbk
31232993125371520723Island text1.9988937.012747.534Neighbours17BLASTN+1232993.gbk
41257392*128528927898Island text1.9465334.245831.0188Neighbours17BLASTN+1257392.gbk
51295918132691931002Island text1.6987935.240329.6626Neighbours17BLASTN+1295918.gbk
61334514*141325478741Island text1.7339534.986829.4666Neighbours17BLASTN1334514.gbk
71432000*149072458725Island text1.7154135.598334.2037Neighbours17BLASTN+1432000.gbk
81495274*151989524622Island text1.9046735.760130.6316Neighbours17BLASTN+1495274.gbk
91805503182478619284Island text1.7937737.224428.5492Neighbours14BLASTN+1805503.gbk
102084805*210846423660Island text1.6641934.061944.1122Neighbours14BLASTN+2084805.gbk
112281180*230689725718Island text1.9020333.694148.7453Neighbours17BLASTN2281180.gbk